sounds like you're getting it all figured out, but to add my 2 cents..
i'm a believer in pt, go if you can, as often as you can. although my situation was different (partial tear of acl & mcl), pt helped more in muscle recovery than i thought. after a knee injury your surrounding muscles compensate for the weakness. as such, the simple firing of the quadricep muscle during simple movements was lacking compared to my healthy knee. i wouldn't have noticed it had i not had an electrical device that measured the firing of specific muscles. pt helped condition the target muscle to fully contract which ultimately helped stabalize the knee.
unknowingly favoring the good knee and continued atrophy (lack of muscle development) of the bad knee could be indications of some important leg muscles not adequately supporting and motioning the knee which would lead to alignment issues, pain, yada, yada.
hopefully all goes well, and you'll get your knee dialed in...
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